J6_11IQ_003
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 11IQ|1|28|G|3922, 11IQ|1|28|A|4376, 11IQ|1|28|A|4378, 11IQ|1|28|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11IQ|1|28|U|3920
11IQ|1|28|U|3921
11IQ|1|28|G|3922
11IQ|1|28|A|3923
*
11IQ|1|28|U|4188
11IQ|1|28|U|4189
11IQ|1|28|U|4190
11IQ|1|28|G|4191
*
11IQ|1|28|C|4204
11IQ|1|28|A|4205
*
11IQ|1|28|U|4227
11IQ|1|28|G|4228
11IQ|1|28|U|4229
11IQ|1|28|C|4230
*
11IQ|1|28|G|4331
11IQ|1|28|C|4332
11IQ|1|28|C|4333
11IQ|1|28|U|4334
11IQ|1|28|C|4335
11IQ|1|28|A|4336
11IQ|1|28|C|4337
11IQ|1|28|G|4338
11IQ|1|28|A|4339
11IQ|1|28|U|4340
11IQ|1|28|C|4341
11IQ|1|28|C|4342
*
11IQ|1|28|G|4370
11IQ|1|28|G|4371
11IQ|1|28|U|4372
11IQ|1|28|G|4373
11IQ|1|28|U|4374
11IQ|1|28|C|4375
11IQ|1|28|A|4376
11IQ|1|28|G|4377
11IQ|1|28|A|4378
11IQ|1|28|A|4379
11IQ|1|28|A|4380
11IQ|1|28|A|4381
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 15
- 60S ribosomal protein L15
- Chain 21
- 60S ribosomal protein L21
- Chain 29
- Large ribosomal subunit protein eL29
- Chain 42
- eL42
- Chain B
- Eukaryotic translation initiation factor 5A-1
- Chain L8
- 60S ribosomal protein L8
- Chain Q
- Large ribosomal subunit protein eL18
- Chain dd
- 60S ribosomal protein L27a
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