J6_11JJ_001
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 11JJ|1|28|A|66, 11JJ|1|58|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11JJ|1|28|G|21
11JJ|1|28|G|22
11JJ|1|28|C|23
11JJ|1|28|G|24
11JJ|1|28|A|25
11JJ|1|28|C|26
*
11JJ|1|28|G|57
11JJ|1|28|G|58
11JJ|1|28|A|59
11JJ|1|28|A|60
11JJ|1|28|A|61
11JJ|1|28|A|62
11JJ|1|28|G|63
11JJ|1|28|A|64
11JJ|1|28|A|65
11JJ|1|28|A|66
11JJ|1|28|C|67
*
11JJ|1|28|G|74
11JJ|1|28|G|75
11JJ|1|28|A|76
11JJ|1|28|U|77
11JJ|1|28|U|78
*
11JJ|1|28|A|105
11JJ|1|28|A|106
11JJ|1|28|G|107
11JJ|1|28|A|108
11JJ|1|28|G|109
*
11JJ|1|28|C|332
11JJ|1|28|U|333
11JJ|1|28|A|334
11JJ|1|28|A|335
11JJ|1|28|A|336
11JJ|1|28|U|337
11JJ|1|28|A|338
11JJ|1|28|C|339
*
11JJ|1|58|G|33
11JJ|1|58|U|34
11JJ|1|58|C|35
Current chains
- Chain 28
- 28S rRNA
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 35
- 60S ribosomal protein L35
- Chain 36
- 60S ribosomal protein L36
- Chain 37
- 60S ribosomal protein L37
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