J6_1J5A_002

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUA*UUUGAC*GUCG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

45 nucleotides

Bulged bases

1J5A|1|A|U|2059, 1J5A|1|A|G|2407, 1J5A|1|A|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|U|2057
1J5A|1|A|U|2058
1J5A|1|A|U|2059
1J5A|1|A|A|2060
*
1J5A|1|A|U|2222
1J5A|1|A|U|2223
1J5A|1|A|U|2224
1J5A|1|A|G|2225
1J5A|1|A|A|2226
1J5A|1|A|C|2227
*
1J5A|1|A|G|2235
1J5A|1|A|U|2236
1J5A|1|A|C|2237
1J5A|1|A|G|2238
*
1J5A|1|A|C|2260
1J5A|1|A|G|2261
1J5A|1|A|C|2262
1J5A|1|A|C|2263
*
1J5A|1|A|G|2363
1J5A|1|A|C|2364
1J5A|1|A|U|2365
1J5A|1|A|U|2366
1J5A|1|A|A|2367
1J5A|1|A|G|2368
1J5A|1|A|U|2369
1J5A|1|A|G|2370
1J5A|1|A|A|2371
1J5A|1|A|A|2372
1J5A|1|A|C|2373
1J5A|1|A|C|2374
*
1J5A|1|A|G|2400
1J5A|1|A|A|2401
1J5A|1|A|U|2402
1J5A|1|A|C|2403
1J5A|1|A|A|2404
1J5A|1|A|A|2405
1J5A|1|A|C|2406
1J5A|1|A|G|2407
1J5A|1|A|G|2408
1J5A|1|A|A|2409
1J5A|1|A|U|2410
1J5A|1|A|A|2411
1J5A|1|A|A|2412
1J5A|1|A|A|2413
1J5A|1|A|A|2414

Current chains

Chain A

23S RRNA

Nearby chains