J6_1NKW_001

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

1NKW|1|0|A|200, 1NKW|1|0|A|242, 1NKW|1|0|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NKW|1|0|G|44
1NKW|1|0|C|45
*
1NKW|1|0|G|156
1NKW|1|0|G|157
1NKW|1|0|A|158
1NKW|1|0|A|159
1NKW|1|0|C|160
*
1NKW|1|0|G|191
1NKW|1|0|G|192
1NKW|1|0|A|193
1NKW|1|0|G|194
1NKW|1|0|A|195
1NKW|1|0|A|196
1NKW|1|0|G|197
1NKW|1|0|A|198
1NKW|1|0|A|199
1NKW|1|0|A|200
1NKW|1|0|G|201
*
1NKW|1|0|C|208
1NKW|1|0|G|209
1NKW|1|0|A|210
1NKW|1|0|U|211
1NKW|1|0|U|212
*
1NKW|1|0|A|239
1NKW|1|0|U|240
1NKW|1|0|C|241
1NKW|1|0|A|242
1NKW|1|0|G|243
*
1NKW|1|0|C|439
1NKW|1|0|U|440
1NKW|1|0|A|441
1NKW|1|0|A|442
1NKW|1|0|A|443
1NKW|1|0|U|444
1NKW|1|0|A|445
1NKW|1|0|C|446

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34