J6_1NWY_001

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

1NWY|1|0|A|200, 1NWY|1|0|A|242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NWY|1|0|G|44
1NWY|1|0|C|45
*
1NWY|1|0|G|156
1NWY|1|0|G|157
1NWY|1|0|A|158
1NWY|1|0|A|159
1NWY|1|0|C|160
*
1NWY|1|0|G|191
1NWY|1|0|G|192
1NWY|1|0|A|193
1NWY|1|0|G|194
1NWY|1|0|A|195
1NWY|1|0|A|196
1NWY|1|0|G|197
1NWY|1|0|A|198
1NWY|1|0|A|199
1NWY|1|0|A|200
1NWY|1|0|G|201
*
1NWY|1|0|C|208
1NWY|1|0|G|209
1NWY|1|0|A|210
1NWY|1|0|U|211
1NWY|1|0|U|212
*
1NWY|1|0|A|239
1NWY|1|0|U|240
1NWY|1|0|C|241
1NWY|1|0|A|242
1NWY|1|0|G|243
*
1NWY|1|0|C|439
1NWY|1|0|U|440
1NWY|1|0|A|441
1NWY|1|0|A|442
1NWY|1|0|A|443
1NWY|1|0|U|444
1NWY|1|0|A|445
1NWY|1|0|C|446

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 2

ribosomal protein L34