J6_1VWW_001

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUG*CAAAGCAUC*GAUGUGAUUUCUGC*GCGGGA*UCUCUUAAGGUAGC*GCAUGAAUGGAUGAAC

Length

64 nucleotides

Bulged bases

1VWW|1|5|C|3771, 1VWW|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|3634
1VWW|1|5|A|3635
1VWW|1|5|C|3636
1VWW|1|5|U|3637
1VWW|1|5|G|3638
*
1VWW|1|5|C|3650
1VWW|1|5|A|3651
1VWW|1|5|A|3652
1VWW|1|5|A|3653
1VWW|1|5|G|3654
1VWW|1|5|C|3655
1VWW|1|5|A|3656
1VWW|1|5|U|3657
1VWW|1|5|C|3658
*
1VWW|1|5|G|3686
1VWW|1|5|A|3687
1VWW|1|5|U|3688
1VWW|1|5|G|3689
1VWW|1|5|U|3690
1VWW|1|5|G|3691
1VWW|1|5|A|3692
1VWW|1|5|U|3693
1VWW|1|5|U|3694
1VWW|1|5|U|3695
1VWW|1|5|C|3696
1VWW|1|5|U|3697
1VWW|1|5|G|3698
1VWW|1|5|C|3699
*
1VWW|1|5|G|3751
1VWW|1|5|C|3752
1VWW|1|5|G|3753
1VWW|1|5|G|3754
1VWW|1|5|G|3755
1VWW|1|5|A|3756
*
1VWW|1|5|U|3768
1VWW|1|5|C|3769
1VWW|1|5|U|3770
1VWW|1|5|C|3771
1VWW|1|5|U|3772
1VWW|1|5|U|3773
1VWW|1|5|A|3774
1VWW|1|5|A|3775
1VWW|1|5|G|3776
1VWW|1|5|G|3777
1VWW|1|5|U|3778
1VWW|1|5|A|3779
1VWW|1|5|G|3780
1VWW|1|5|C|3781
*
1VWW|1|5|G|3811
1VWW|1|5|C|3812
1VWW|1|5|A|3813
1VWW|1|5|U|3814
1VWW|1|5|G|3815
1VWW|1|5|A|3816
1VWW|1|5|A|3817
1VWW|1|5|U|3818
1VWW|1|5|G|3819
1VWW|1|5|G|3820
1VWW|1|5|A|3821
1VWW|1|5|U|3822
1VWW|1|5|G|3823
1VWW|1|5|A|3824
1VWW|1|5|A|3825
1VWW|1|5|C|3826

Current chains

Chain 5

28S ribosomal RNA

Nearby chains