J6_1VX6_001

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAU*AGAAAAGAAAA*UGAUU*ACCAG*CUAAAUAUAU*AG

Length

38 nucleotides

Bulged bases

1VX6|1|A|A|67, 1VX6|1|A|A|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|C|23
1VX6|1|A|A|24
1VX6|1|A|A|25
1VX6|1|A|A|26
1VX6|1|A|U|27
*
1VX6|1|A|A|58
1VX6|1|A|G|59
1VX6|1|A|A|60
1VX6|1|A|A|61
1VX6|1|A|A|62
1VX6|1|A|A|63
1VX6|1|A|G|64
1VX6|1|A|A|65
1VX6|1|A|A|66
1VX6|1|A|A|67
1VX6|1|A|A|68
*
1VX6|1|A|U|75
1VX6|1|A|G|76
1VX6|1|A|A|77
1VX6|1|A|U|78
1VX6|1|A|U|79
*
1VX6|1|A|A|106
1VX6|1|A|C|107
1VX6|1|A|C|108
1VX6|1|A|A|109
1VX6|1|A|G|110
*
1VX6|1|A|C|329
1VX6|1|A|U|330
1VX6|1|A|A|331
1VX6|1|A|A|332
1VX6|1|A|A|333
1VX6|1|A|U|334
1VX6|1|A|A|335
1VX6|1|A|U|336
1VX6|1|A|A|337
1VX6|1|A|U|338
*
1VX6|1|C|A|37
1VX6|1|C|G|38

Current chains

Chain A

28S ribosomal RNA

Chain C

5.8S ribosomal RNA

Nearby chains