J6_1VY7_003

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

1VY7|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY7|1|DA|G|44
1VY7|1|DA|C|45
*
1VY7|1|DA|G|179
1VY7|1|DA|G|180
1VY7|1|DA|A|181
1VY7|1|DA|A|182
1VY7|1|DA|C|183
*
1VY7|1|DA|G|214
1VY7|1|DA|G|215
1VY7|1|DA|A|216
1VY7|1|DA|G|217
1VY7|1|DA|A|218
1VY7|1|DA|G|219
1VY7|1|DA|G|220
1VY7|1|DA|A|221
1VY7|1|DA|A|222
1VY7|1|DA|A|223
1VY7|1|DA|G|224
*
1VY7|1|DA|C|231
1VY7|1|DA|G|232
1VY7|1|DA|A|233
1VY7|1|DA|C|234
1VY7|1|DA|U|235
*
1VY7|1|DA|A|262
1VY7|1|DA|C|263
1VY7|1|DA|C|264
1VY7|1|DA|A|265
1VY7|1|DA|G|266
*
1VY7|1|DA|C|426
1VY7|1|DA|U|427
1VY7|1|DA|A|428
1VY7|1|DA|A|429
1VY7|1|DA|G|430
1VY7|1|DA|U|431
1VY7|1|DA|A|432
1VY7|1|DA|C|433

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34