J6_1YJN_001
3D structure
- PDB id
- 1YJN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC
- Length
- 36 nucleotides
- Bulged bases
- 1YJN|1|0|A|193, 1YJN|1|0|C|438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1YJN|1|0|G|41
1YJN|1|0|C|42
*
1YJN|1|0|G|149
1YJN|1|0|G|150
1YJN|1|0|A|151
1YJN|1|0|A|152
1YJN|1|0|C|153
*
1YJN|1|0|G|184
1YJN|1|0|G|185
1YJN|1|0|A|186
1YJN|1|0|A|187
1YJN|1|0|C|188
1YJN|1|0|A|189
1YJN|1|0|G|190
1YJN|1|0|A|191
1YJN|1|0|A|192
1YJN|1|0|A|193
1YJN|1|0|A|194
*
1YJN|1|0|U|202
1YJN|1|0|G|203
1YJN|1|0|A|204
1YJN|1|0|U|205
1YJN|1|0|G|206
*
1YJN|1|0|U|233
1YJN|1|0|A|234
1YJN|1|0|C|235
1YJN|1|0|A|236
1YJN|1|0|G|237
*
1YJN|1|0|C|433
1YJN|1|0|U|434
1YJN|1|0|A|435
1YJN|1|0|A|436
1YJN|1|0|A|437
1YJN|1|0|C|438
1YJN|1|0|A|439
1YJN|1|0|C|440
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain M
- 50S Ribosomal Protein L15E
Coloring options: