J6_1Z58_001

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGAGG*CCAGAC*GAUUCAACUCGCGAAGCGAGUUGUCUGGUAG

Length

56 nucleotides

Bulged bases

1Z58|1|2|A|956, 1Z58|1|2|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Z58|1|2|C|830
1Z58|1|2|G|831
1Z58|1|2|A|832
1Z58|1|2|A|833
1Z58|1|2|A|834
1Z58|1|2|U|835
*
1Z58|1|2|A|848
1Z58|1|2|G|849
*
1Z58|1|2|U|954
1Z58|1|2|G|955
1Z58|1|2|A|956
1Z58|1|2|G|957
*
1Z58|1|2|C|982
1Z58|1|2|G|983
1Z58|1|2|A|984
1Z58|1|2|G|985
1Z58|1|2|A|986
1Z58|1|2|G|987
1Z58|1|2|G|988
*
1Z58|1|2|C|997
1Z58|1|2|C|998
1Z58|1|2|A|999
1Z58|1|2|G|1000
1Z58|1|2|A|1001
1Z58|1|2|C|1002
*
1Z58|1|2|G|1174
1Z58|1|2|A|1175
1Z58|1|2|U|1176
1Z58|1|2|U|1177
1Z58|1|2|C|1178
1Z58|1|2|A|1179
1Z58|1|2|A|1180
1Z58|1|2|C|1181
1Z58|1|2|U|1182
1Z58|1|2|C|1183
1Z58|1|2|G|1184
1Z58|1|2|C|1185
1Z58|1|2|G|1186
1Z58|1|2|A|1187
1Z58|1|2|A|1188
1Z58|1|2|G|1189
1Z58|1|2|C|1190
1Z58|1|2|G|1191
1Z58|1|2|A|1192
1Z58|1|2|G|1193
1Z58|1|2|U|1194
1Z58|1|2|U|1195
1Z58|1|2|G|1196
1Z58|1|2|U|1197
1Z58|1|2|C|1198
1Z58|1|2|U|1199
1Z58|1|2|G|1200
1Z58|1|2|G|1201
1Z58|1|2|U|1202
1Z58|1|2|A|1203
1Z58|1|2|G|1204

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains