Loop J6_23WI

3D structure

PDB id: 23WI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 23WI|1|5|U|2076, 23WI|1|5|A|2388, 23WI|1|5|U|2390, 23WI|1|5|G|2428, 23WI|1|5|A|2430, 23WI|1|5|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

23WI|1|5|U|2074
23WI|1|5|U|2075
23WI|1|5|U|2076
23WI|1|5|A|2077
*
23WI|1|5|U|2243
23WI|1|5|U|2244
23WI|1|5|U|2245
23WI|1|5|G|2246
*
23WI|1|5|C|2258
23WI|1|5|U|2259
*
23WI|1|5|A|2281
23WI|1|5|G|2282
23WI|1|5|C|2283
23WI|1|5|A|2284
*
23WI|1|5|U|2384
23WI|1|5|C|2385
23WI|1|5|A|2386
23WI|1|5|U|2387
23WI|1|5|A|2388
23WI|1|5|G|2389
23WI|1|5|U|2390
23WI|1|5|G|2391
23WI|1|5|A|2392
23WI|1|5|U|2393
23WI|1|5|C|2394
23WI|1|5|C|2395
*
23WI|1|5|G|2421
23WI|1|5|C|2422
23WI|1|5|U|2423
23WI|1|5|C|2424
23WI|1|5|A|2425
23WI|1|5|A|2426
23WI|1|5|C|2427
23WI|1|5|G|2428
23WI|1|5|G|2429
23WI|1|5|A|2430
23WI|1|5|U|2431
23WI|1|5|A|2432
23WI|1|5|A|2433
23WI|1|5|A|2434
23WI|1|5|A|2435

Current chains

Chain 5: RNA (2014-MER)

Nearby chains

Chain 1: 50S ribosomal protein L33
Chain 3: 50S ribosomal protein L35
Chain A: Small subunit ribosomal RNA; SSU rRNA
Chain C: Large ribosomal subunit protein uL2
Chain L: Large ribosomal subunit protein uL15
Chain W: 50S ribosomal protein L27
Chain X: 50S ribosomal protein L28

J6_23WI_001