J6_28LN_001
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 28LN|1|B5|A|66, 28LN|1|B8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|G|21
28LN|1|B5|G|22
28LN|1|B5|C|23
28LN|1|B5|G|24
28LN|1|B5|A|25
28LN|1|B5|C|26
*
28LN|1|B5|G|57
28LN|1|B5|G|58
28LN|1|B5|A|59
28LN|1|B5|G|60
28LN|1|B5|A|61
28LN|1|B5|A|62
28LN|1|B5|G|63
28LN|1|B5|A|64
28LN|1|B5|A|65
28LN|1|B5|A|66
28LN|1|B5|C|67
*
28LN|1|B5|G|74
28LN|1|B5|G|75
28LN|1|B5|A|76
28LN|1|B5|U|77
28LN|1|B5|U|78
*
28LN|1|B5|A|105
28LN|1|B5|A|106
28LN|1|B5|G|107
28LN|1|B5|A|108
28LN|1|B5|G|109
*
28LN|1|B5|C|332
28LN|1|B5|U|333
28LN|1|B5|A|334
28LN|1|B5|A|335
28LN|1|B5|A|336
28LN|1|B5|U|337
28LN|1|B5|A|338
28LN|1|B5|C|339
*
28LN|1|B8|G|33
28LN|1|B8|U|34
28LN|1|B8|C|35
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein L13
- Chain BN
- 60S ribosomal protein L15
- Chain Bh
- 60S ribosomal protein L35
- Chain Bi
- 60S ribosomal protein L36
- Chain Bj
- Large ribosomal subunit protein eL37
Coloring options: