J6_28LN_003
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUUACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 28LN|1|B5|G|3921, 28LN|1|B5|C|4336, 28LN|1|B5|A|4375, 28LN|1|B5|A|4377, 28LN|1|B5|A|4378
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|PSU|3919
28LN|1|B5|U|3920
28LN|1|B5|G|3921
28LN|1|B5|A|3922
*
28LN|1|B5|U|4187
28LN|1|B5|U|4188
28LN|1|B5|U|4189
28LN|1|B5|G|4190
*
28LN|1|B5|C|4203
28LN|1|B5|A|4204
*
28LN|1|B5|OMU|4226
28LN|1|B5|OMG|4227
28LN|1|B5|U|4228
28LN|1|B5|C|4229
*
28LN|1|B5|G|4330
28LN|1|B5|C|4331
28LN|1|B5|C|4332
28LN|1|B5|U|4333
28LN|1|B5|U|4334
28LN|1|B5|A|4335
28LN|1|B5|C|4336
28LN|1|B5|G|4337
28LN|1|B5|A|4338
28LN|1|B5|U|4339
28LN|1|B5|C|4340
28LN|1|B5|C|4341
*
28LN|1|B5|OMG|4369
28LN|1|B5|G|4370
28LN|1|B5|U|4371
28LN|1|B5|G|4372
28LN|1|B5|U|4373
28LN|1|B5|C|4374
28LN|1|B5|A|4375
28LN|1|B5|G|4376
28LN|1|B5|A|4377
28LN|1|B5|A|4378
28LN|1|B5|A|4379
28LN|1|B5|A|4380
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BN
- 60S ribosomal protein L15
- Chain BQ
- 60S ribosomal protein L18
- Chain BT
- 60S ribosomal protein L21
- Chain Ba
- Large ribosomal subunit protein uL15
- Chain Bo
- Large ribosomal subunit protein eL42
Coloring options: