J6_2AAR_001

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

2AAR|1|0|A|200, 2AAR|1|0|A|242, 2AAR|1|0|A|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2AAR|1|0|G|44
2AAR|1|0|C|45
*
2AAR|1|0|G|156
2AAR|1|0|G|157
2AAR|1|0|A|158
2AAR|1|0|A|159
2AAR|1|0|C|160
*
2AAR|1|0|G|191
2AAR|1|0|G|192
2AAR|1|0|A|193
2AAR|1|0|G|194
2AAR|1|0|A|195
2AAR|1|0|A|196
2AAR|1|0|G|197
2AAR|1|0|A|198
2AAR|1|0|A|199
2AAR|1|0|A|200
2AAR|1|0|G|201
*
2AAR|1|0|C|208
2AAR|1|0|G|209
2AAR|1|0|A|210
2AAR|1|0|U|211
2AAR|1|0|U|212
*
2AAR|1|0|A|239
2AAR|1|0|U|240
2AAR|1|0|C|241
2AAR|1|0|A|242
2AAR|1|0|G|243
*
2AAR|1|0|C|439
2AAR|1|0|U|440
2AAR|1|0|A|441
2AAR|1|0|A|442
2AAR|1|0|A|443
2AAR|1|0|U|444
2AAR|1|0|A|445
2AAR|1|0|C|446

Current chains

Chain 0

23S ribosomal RNA

Nearby chains