J6_2J28_001

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

2J28|1|B|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2J28|1|B|G|45
2J28|1|B|G|46
*
2J28|1|B|C|179
2J28|1|B|G|180
2J28|1|B|A|181
2J28|1|B|A|182
2J28|1|B|C|183
*
2J28|1|B|G|214
2J28|1|B|G|215
2J28|1|B|A|216
2J28|1|B|A|217
2J28|1|B|A|218
2J28|1|B|A|219
2J28|1|B|G|220
2J28|1|B|A|221
2J28|1|B|A|222
2J28|1|B|A|223
2J28|1|B|U|224
*
2J28|1|B|A|231
2J28|1|B|G|232
2J28|1|B|A|233
2J28|1|B|U|234
2J28|1|B|U|235
*
2J28|1|B|A|262
2J28|1|B|G|263
2J28|1|B|C|264
2J28|1|B|A|265
2J28|1|B|G|266
*
2J28|1|B|C|426
2J28|1|B|U|427
2J28|1|B|A|428
2J28|1|B|A|429
2J28|1|B|A|430
2J28|1|B|U|431
2J28|1|B|A|432
2J28|1|B|C|433

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34