3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
2J28|1|B|U|2076, 2J28|1|B|A|2388, 2J28|1|B|U|2390, 2J28|1|B|G|2428, 2J28|1|B|A|2430, 2J28|1|B|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

2J28|1|B|U|2074
2J28|1|B|U|2075
2J28|1|B|U|2076
2J28|1|B|A|2077
*
2J28|1|B|U|2243
2J28|1|B|U|2244
2J28|1|B|U|2245
2J28|1|B|G|2246
*
2J28|1|B|C|2258
2J28|1|B|U|2259
*
2J28|1|B|A|2281
2J28|1|B|G|2282
2J28|1|B|C|2283
2J28|1|B|A|2284
*
2J28|1|B|U|2384
2J28|1|B|C|2385
2J28|1|B|A|2386
2J28|1|B|U|2387
2J28|1|B|A|2388
2J28|1|B|G|2389
2J28|1|B|U|2390
2J28|1|B|G|2391
2J28|1|B|A|2392
2J28|1|B|U|2393
2J28|1|B|C|2394
2J28|1|B|C|2395
*
2J28|1|B|G|2421
2J28|1|B|C|2422
2J28|1|B|U|2423
2J28|1|B|C|2424
2J28|1|B|A|2425
2J28|1|B|A|2426
2J28|1|B|C|2427
2J28|1|B|G|2428
2J28|1|B|G|2429
2J28|1|B|A|2430
2J28|1|B|U|2431
2J28|1|B|A|2432
2J28|1|B|A|2433
2J28|1|B|A|2434
2J28|1|B|A|2435

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain 1
50S RIBOSOMAL PROTEIN L33
Chain 3
50S RIBOSOMAL PROTEIN L35
Chain C
50S RIBOSOMAL PROTEIN L2
Chain L
50S RIBOSOMAL PROTEIN L15
Chain W
50S RIBOSOMAL PROTEIN L27
Chain Z
50S RIBOSOMAL PROTEIN L31

Coloring options:

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