J6_2OGO_001

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUUC*GAUCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

2OGO|1|0|A|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|G|44
2OGO|1|0|C|45
*
2OGO|1|0|G|156
2OGO|1|0|G|157
2OGO|1|0|A|158
2OGO|1|0|A|159
2OGO|1|0|C|160
*
2OGO|1|0|G|191
2OGO|1|0|G|192
2OGO|1|0|A|193
2OGO|1|0|G|194
2OGO|1|0|A|195
2OGO|1|0|A|196
2OGO|1|0|G|197
2OGO|1|0|A|198
2OGO|1|0|A|199
2OGO|1|0|A|200
2OGO|1|0|G|201
*
2OGO|1|0|C|208
2OGO|1|0|G|209
2OGO|1|0|A|210
2OGO|1|0|U|211
2OGO|1|0|U|212
2OGO|1|0|C|213
*
2OGO|1|0|G|238
2OGO|1|0|A|239
2OGO|1|0|U|240
2OGO|1|0|C|241
2OGO|1|0|A|242
2OGO|1|0|G|243
*
2OGO|1|0|C|439
2OGO|1|0|U|440
2OGO|1|0|A|441
2OGO|1|0|A|442
2OGO|1|0|A|443
2OGO|1|0|U|444
2OGO|1|0|A|445
2OGO|1|0|C|446

Current chains

Chain 0

23S ribosomal RNA

Nearby chains