Loop J6_3BBX

3D structure

PDB id: 3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description: The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 3BBX|1|B|U|2076, 3BBX|1|B|U|2390, 3BBX|1|B|G|2428, 3BBX|1|B|A|2430, 3BBX|1|B|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3BBX|1|B|U|2074
3BBX|1|B|U|2075
3BBX|1|B|U|2076
3BBX|1|B|A|2077
*
3BBX|1|B|U|2243
3BBX|1|B|U|2244
3BBX|1|B|U|2245
3BBX|1|B|G|2246
*
3BBX|1|B|C|2258
3BBX|1|B|U|2259
*
3BBX|1|B|A|2281
3BBX|1|B|G|2282
3BBX|1|B|C|2283
3BBX|1|B|A|2284
*
3BBX|1|B|U|2384
3BBX|1|B|C|2385
3BBX|1|B|A|2386
3BBX|1|B|U|2387
3BBX|1|B|A|2388
3BBX|1|B|G|2389
3BBX|1|B|U|2390
3BBX|1|B|G|2391
3BBX|1|B|A|2392
3BBX|1|B|U|2393
3BBX|1|B|C|2394
3BBX|1|B|C|2395
*
3BBX|1|B|G|2421
3BBX|1|B|C|2422
3BBX|1|B|U|2423
3BBX|1|B|C|2424
3BBX|1|B|A|2425
3BBX|1|B|A|2426
3BBX|1|B|C|2427
3BBX|1|B|G|2428
3BBX|1|B|G|2429
3BBX|1|B|A|2430
3BBX|1|B|U|2431
3BBX|1|B|A|2432
3BBX|1|B|A|2433
3BBX|1|B|A|2434
3BBX|1|B|A|2435

Current chains

Chain B: 23S ribosomal RNA

Nearby chains

Chain 1: 50S ribosomal protein L33
Chain 3: 50S ribosomal protein L35
Chain L: 50S ribosomal protein L15
Chain W: 50S ribosomal protein L27
Chain Z: 50S ribosomal protein L31

J6_3BBX_002