3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
3BBX|1|B|U|2076, 3BBX|1|B|U|2390, 3BBX|1|B|G|2428, 3BBX|1|B|A|2430, 3BBX|1|B|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3BBX|1|B|U|2074
3BBX|1|B|U|2075
3BBX|1|B|U|2076
3BBX|1|B|A|2077
*
3BBX|1|B|U|2243
3BBX|1|B|U|2244
3BBX|1|B|U|2245
3BBX|1|B|G|2246
*
3BBX|1|B|C|2258
3BBX|1|B|U|2259
*
3BBX|1|B|A|2281
3BBX|1|B|G|2282
3BBX|1|B|C|2283
3BBX|1|B|A|2284
*
3BBX|1|B|U|2384
3BBX|1|B|C|2385
3BBX|1|B|A|2386
3BBX|1|B|U|2387
3BBX|1|B|A|2388
3BBX|1|B|G|2389
3BBX|1|B|U|2390
3BBX|1|B|G|2391
3BBX|1|B|A|2392
3BBX|1|B|U|2393
3BBX|1|B|C|2394
3BBX|1|B|C|2395
*
3BBX|1|B|G|2421
3BBX|1|B|C|2422
3BBX|1|B|U|2423
3BBX|1|B|C|2424
3BBX|1|B|A|2425
3BBX|1|B|A|2426
3BBX|1|B|C|2427
3BBX|1|B|G|2428
3BBX|1|B|G|2429
3BBX|1|B|A|2430
3BBX|1|B|U|2431
3BBX|1|B|A|2432
3BBX|1|B|A|2433
3BBX|1|B|A|2434
3BBX|1|B|A|2435

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27
Chain Z
50S ribosomal protein L31

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1656 s