J6_3J6Y_001
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGGC*GCAUC
- Length
- 44 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|67, 3J6Y|1|2S|U|329, 3J6Y|1|8S|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|G|22
3J6Y|1|2S|A|23
3J6Y|1|2S|G|24
3J6Y|1|2S|U|25
3J6Y|1|2S|A|26
3J6Y|1|2S|C|27
*
3J6Y|1|2S|G|58
3J6Y|1|2S|G|59
3J6Y|1|2S|A|60
3J6Y|1|2S|A|61
3J6Y|1|2S|A|62
3J6Y|1|2S|A|63
3J6Y|1|2S|G|64
3J6Y|1|2S|A|65
3J6Y|1|2S|A|66
3J6Y|1|2S|A|67
3J6Y|1|2S|C|68
*
3J6Y|1|2S|G|75
3J6Y|1|2S|G|76
3J6Y|1|2S|A|77
3J6Y|1|2S|U|78
3J6Y|1|2S|U|79
*
3J6Y|1|2S|A|106
3J6Y|1|2S|A|107
3J6Y|1|2S|A|108
3J6Y|1|2S|A|109
3J6Y|1|2S|G|110
*
3J6Y|1|2S|C|321
3J6Y|1|2S|U|322
3J6Y|1|2S|A|323
3J6Y|1|2S|A|324
3J6Y|1|2S|A|325
3J6Y|1|2S|U|326
3J6Y|1|2S|A|327
3J6Y|1|2S|U|328
3J6Y|1|2S|U|329
3J6Y|1|2S|G|330
3J6Y|1|2S|G|331
3J6Y|1|2S|C|332
*
3J6Y|1|8S|G|31
3J6Y|1|8S|C|32
3J6Y|1|8S|A|33
3J6Y|1|8S|U|34
3J6Y|1|8S|C|35
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 55
- 60S ribosomal protein L15
- Chain 75
- 60S ribosomal protein L35
- Chain 76
- 60S ribosomal protein L36
- Chain 77
- 60S ribosomal protein L37
- Chain L4
- 60S ribosomal protein L4
Coloring options: