J6_3J6Y_002
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 3J6Y|1|2S|G|2418, 3J6Y|1|2S|C|2760, 3J6Y|1|2S|A|2799, 3J6Y|1|2S|A|2801, 3J6Y|1|2S|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|U|2416
3J6Y|1|2S|U|2417
3J6Y|1|2S|G|2418
3J6Y|1|2S|A|2419
*
3J6Y|1|2S|U|2611
3J6Y|1|2S|U|2612
3J6Y|1|2S|U|2613
3J6Y|1|2S|G|2614
*
3J6Y|1|2S|C|2627
3J6Y|1|2S|A|2628
*
3J6Y|1|2S|U|2650
3J6Y|1|2S|G|2651
3J6Y|1|2S|U|2652
3J6Y|1|2S|C|2653
*
3J6Y|1|2S|G|2754
3J6Y|1|2S|C|2755
3J6Y|1|2S|C|2756
3J6Y|1|2S|U|2757
3J6Y|1|2S|A|2758
3J6Y|1|2S|U|2759
3J6Y|1|2S|C|2760
3J6Y|1|2S|G|2761
3J6Y|1|2S|A|2762
3J6Y|1|2S|U|2763
3J6Y|1|2S|C|2764
3J6Y|1|2S|C|2765
*
3J6Y|1|2S|G|2793
3J6Y|1|2S|G|2794
3J6Y|1|2S|U|2795
3J6Y|1|2S|G|2796
3J6Y|1|2S|C|2797
3J6Y|1|2S|C|2798
3J6Y|1|2S|A|2799
3J6Y|1|2S|G|2800
3J6Y|1|2S|A|2801
3J6Y|1|2S|A|2802
3J6Y|1|2S|A|2803
3J6Y|1|2S|A|2804
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 55
- 60S ribosomal protein L15
- Chain 58
- 60S ribosomal protein L18
- Chain 61
- 60S ribosomal protein L21
- Chain 68
- 60S ribosomal protein L28
- Chain 69
- 60S ribosomal protein L29
- Chain 82
- 60S ribosomal protein L42
- Chain L2
- 60S ribosomal protein L2
Coloring options: