J6_3J74_001

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACUG*CAAAGCAUC*GAUGUGAUUUCUG*CGGGA*UCUCUUAAGGUAGC*GCAUGAAUGGAUGAAC

Length

62 nucleotides

Bulged bases

3J74|1|5|C|3771, 3J74|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J74|1|5|G|3634
3J74|1|5|A|3635
3J74|1|5|C|3636
3J74|1|5|U|3637
3J74|1|5|G|3638
*
3J74|1|5|C|3650
3J74|1|5|A|3651
3J74|1|5|A|3652
3J74|1|5|A|3653
3J74|1|5|G|3654
3J74|1|5|C|3655
3J74|1|5|A|3656
3J74|1|5|U|3657
3J74|1|5|C|3658
*
3J74|1|5|G|3686
3J74|1|5|A|3687
3J74|1|5|U|3688
3J74|1|5|G|3689
3J74|1|5|U|3690
3J74|1|5|G|3691
3J74|1|5|A|3692
3J74|1|5|U|3693
3J74|1|5|U|3694
3J74|1|5|U|3695
3J74|1|5|C|3696
3J74|1|5|U|3697
3J74|1|5|G|3698
*
3J74|1|5|C|3752
3J74|1|5|G|3753
3J74|1|5|G|3754
3J74|1|5|G|3755
3J74|1|5|A|3756
*
3J74|1|5|U|3768
3J74|1|5|C|3769
3J74|1|5|U|3770
3J74|1|5|C|3771
3J74|1|5|U|3772
3J74|1|5|U|3773
3J74|1|5|A|3774
3J74|1|5|A|3775
3J74|1|5|G|3776
3J74|1|5|G|3777
3J74|1|5|U|3778
3J74|1|5|A|3779
3J74|1|5|G|3780
3J74|1|5|C|3781
*
3J74|1|5|G|3811
3J74|1|5|C|3812
3J74|1|5|A|3813
3J74|1|5|U|3814
3J74|1|5|G|3815
3J74|1|5|A|3816
3J74|1|5|A|3817
3J74|1|5|U|3818
3J74|1|5|G|3819
3J74|1|5|G|3820
3J74|1|5|A|3821
3J74|1|5|U|3822
3J74|1|5|G|3823
3J74|1|5|A|3824
3J74|1|5|A|3825
3J74|1|5|C|3826

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL12

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Ribosomal protein eL41

Chain p

Ribosomal protein eL43