Loop J6_3J77

3D structure

PDB id: 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 3J77|1|2S|A|67, 3J77|1|2S|U|329
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3J77|1|2S|G|22
3J77|1|2S|A|23
3J77|1|2S|G|24
3J77|1|2S|U|25
3J77|1|2S|A|26
3J77|1|2S|C|27
*
3J77|1|2S|G|58
3J77|1|2S|G|59
3J77|1|2S|A|60
3J77|1|2S|A|61
3J77|1|2S|A|62
3J77|1|2S|A|63
3J77|1|2S|G|64
3J77|1|2S|A|65
3J77|1|2S|A|66
3J77|1|2S|A|67
3J77|1|2S|C|68
*
3J77|1|2S|G|75
3J77|1|2S|G|76
3J77|1|2S|A|77
3J77|1|2S|U|78
3J77|1|2S|U|79
*
3J77|1|2S|A|106
3J77|1|2S|A|107
3J77|1|2S|A|108
3J77|1|2S|A|109
3J77|1|2S|G|110
*
3J77|1|2S|C|321
3J77|1|2S|U|322
3J77|1|2S|A|323
3J77|1|2S|A|324
3J77|1|2S|A|325
3J77|1|2S|U|326
3J77|1|2S|A|327
3J77|1|2S|U|328
3J77|1|2S|U|329
3J77|1|2S|G|330
3J77|1|2S|G|331
*
3J77|1|8S|C|32
3J77|1|8S|A|33
3J77|1|8S|U|34
3J77|1|8S|C|35

Current chains

Chain 2S: 25S ribosomal RNA
Chain 8S: 5.8S ribosomal RNA

Nearby chains

Chain 63: 60S ribosomal protein L13
Chain 65: 60S ribosomal protein L15
Chain 85: 60S ribosomal protein L35
Chain 86: 60S ribosomal protein L36
Chain 87: 60S ribosomal protein L37
Chain L4: 60S ribosomal protein L4

J6_3J77_003