J6_3J79_001
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAU*AGAAAAGAAAA*UGAUU*ACCAG*CUAAAUAUAU*AG
- Length
- 38 nucleotides
- Bulged bases
- 3J79|1|A|A|67, 3J79|1|A|A|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|C|23
3J79|1|A|A|24
3J79|1|A|A|25
3J79|1|A|A|26
3J79|1|A|U|27
*
3J79|1|A|A|58
3J79|1|A|G|59
3J79|1|A|A|60
3J79|1|A|A|61
3J79|1|A|A|62
3J79|1|A|A|63
3J79|1|A|G|64
3J79|1|A|A|65
3J79|1|A|A|66
3J79|1|A|A|67
3J79|1|A|A|68
*
3J79|1|A|U|75
3J79|1|A|G|76
3J79|1|A|A|77
3J79|1|A|U|78
3J79|1|A|U|79
*
3J79|1|A|A|106
3J79|1|A|C|107
3J79|1|A|C|108
3J79|1|A|A|109
3J79|1|A|G|110
*
3J79|1|A|C|329
3J79|1|A|U|330
3J79|1|A|A|331
3J79|1|A|A|332
3J79|1|A|A|333
3J79|1|A|U|334
3J79|1|A|A|335
3J79|1|A|U|336
3J79|1|A|A|337
3J79|1|A|U|338
*
3J79|1|C|A|37
3J79|1|C|G|38
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain F
- 60S ribosomal protein uL4
- Chain L
- 60S ribosomal protein eL13
- Chain P
- 60S ribosomal protein eL15
- Chain b
- 60S ribosomal protein eL36
- Chain c
- 60S ribosomal protein eL37
Coloring options: