J6_3J7P_001

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACUG*CAAAGCAU*AUGUGAUUUCUG*CGGG*CUCUUAAGGUAG*UGAAUGGAUGAAC

Length

54 nucleotides

Bulged bases

3J7P|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7P|1|5|G|3634
3J7P|1|5|A|3635
3J7P|1|5|C|3636
3J7P|1|5|U|3637
3J7P|1|5|G|3638
*
3J7P|1|5|C|3650
3J7P|1|5|A|3651
3J7P|1|5|A|3652
3J7P|1|5|A|3653
3J7P|1|5|G|3654
3J7P|1|5|C|3655
3J7P|1|5|A|3656
3J7P|1|5|U|3657
*
3J7P|1|5|A|3687
3J7P|1|5|U|3688
3J7P|1|5|G|3689
3J7P|1|5|U|3690
3J7P|1|5|G|3691
3J7P|1|5|A|3692
3J7P|1|5|U|3693
3J7P|1|5|U|3694
3J7P|1|5|U|3695
3J7P|1|5|C|3696
3J7P|1|5|U|3697
3J7P|1|5|G|3698
*
3J7P|1|5|C|3752
3J7P|1|5|G|3753
3J7P|1|5|G|3754
3J7P|1|5|G|3755
*
3J7P|1|5|C|3769
3J7P|1|5|U|3770
3J7P|1|5|C|3771
3J7P|1|5|U|3772
3J7P|1|5|U|3773
3J7P|1|5|A|3774
3J7P|1|5|A|3775
3J7P|1|5|G|3776
3J7P|1|5|G|3777
3J7P|1|5|U|3778
3J7P|1|5|A|3779
3J7P|1|5|G|3780
*
3J7P|1|5|U|3814
3J7P|1|5|G|3815
3J7P|1|5|A|3816
3J7P|1|5|A|3817
3J7P|1|5|U|3818
3J7P|1|5|G|3819
3J7P|1|5|G|3820
3J7P|1|5|A|3821
3J7P|1|5|U|3822
3J7P|1|5|G|3823
3J7P|1|5|A|3824
3J7P|1|5|A|3825
3J7P|1|5|C|3826

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Ribosomal protein eL41

Chain p

Ribosomal protein eL43