3D structure

PDB id
3J7Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the large ribosomal subunit from human mitochondria
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AGAUAG*CAA*UUAG*CACUA*UUGUAG*CACACCCAAU
Length
34 nucleotides
Bulged bases
3J7Y|1|A|A|2097, 3J7Y|1|A|G|2140, 3J7Y|1|A|U|2141, 3J7Y|1|A|A|2142, 3J7Y|1|A|C|2262
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7Y|1|A|A|2027
3J7Y|1|A|G|2028
3J7Y|1|A|A|2029
3J7Y|1|A|U|2030
3J7Y|1|A|A|2031
3J7Y|1|A|G|2032
*
3J7Y|1|A|C|2043
3J7Y|1|A|A|2044
3J7Y|1|A|A|2045
*
3J7Y|1|A|U|2095
3J7Y|1|A|U|2096
3J7Y|1|A|A|2097
3J7Y|1|A|G|2098
*
3J7Y|1|A|C|2123
3J7Y|1|A|A|2124
3J7Y|1|A|C|2125
3J7Y|1|A|U|2126
3J7Y|1|A|A|2127
*
3J7Y|1|A|U|2138
3J7Y|1|A|U|2139
3J7Y|1|A|G|2140
3J7Y|1|A|U|2141
3J7Y|1|A|A|2142
3J7Y|1|A|G|2143
*
3J7Y|1|A|C|2257
3J7Y|1|A|A|2258
3J7Y|1|A|C|2259
3J7Y|1|A|A|2260
3J7Y|1|A|C|2261
3J7Y|1|A|C|2262
3J7Y|1|A|C|2263
3J7Y|1|A|A|2264
3J7Y|1|A|A|2265
3J7Y|1|A|U|2266

Current chains

Chain A
16S rRNA

Nearby chains

Chain 3
bL35
Chain I
uL10
Chain M
uL15
Chain N
uL16
Chain R
bL20
Chain S
bL21
Chain W
bL27
Chain Z
uL30
Chain i
mL51
Chain j
mL52
Chain o
mL63

Coloring options:

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