J6_3J9W_001

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GCAGACC*GAGGAAGAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

40 nucleotides

Bulged bases

3J9W|1|BA|G|184, 3J9W|1|BA|A|226, 3J9W|1|BA|U|478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9W|1|BA|G|45
3J9W|1|BA|C|46
*
3J9W|1|BA|G|181
3J9W|1|BA|C|182
3J9W|1|BA|A|183
3J9W|1|BA|G|184
3J9W|1|BA|A|185
3J9W|1|BA|C|186
3J9W|1|BA|C|187
*
3J9W|1|BA|G|215
3J9W|1|BA|A|216
3J9W|1|BA|G|217
3J9W|1|BA|G|218
3J9W|1|BA|A|219
3J9W|1|BA|A|220
3J9W|1|BA|G|221
3J9W|1|BA|A|222
3J9W|1|BA|G|223
3J9W|1|BA|A|224
3J9W|1|BA|A|225
3J9W|1|BA|A|226
3J9W|1|BA|G|227
*
3J9W|1|BA|C|234
3J9W|1|BA|G|235
3J9W|1|BA|A|236
3J9W|1|BA|U|237
3J9W|1|BA|U|238
*
3J9W|1|BA|A|265
3J9W|1|BA|U|266
3J9W|1|BA|C|267
3J9W|1|BA|A|268
3J9W|1|BA|G|269
*
3J9W|1|BA|C|473
3J9W|1|BA|U|474
3J9W|1|BA|A|475
3J9W|1|BA|A|476
3J9W|1|BA|A|477
3J9W|1|BA|U|478
3J9W|1|BA|A|479
3J9W|1|BA|C|480

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein bL34

Chain BF

50S ribosomal protein uL4