Loop J6_3JAN

3D structure

PDB id: 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å

Loop

Sequence: GACUG*CAAAGCAU*AUGUGAUUUCUG*CGG*UCUUAAGGUAGC*GCAUGAAUGGAUGAAC
Length: 56 nucleotides
Bulged bases: 3JAN|1|5|U|3818
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JAN|1|5|G|3634
3JAN|1|5|A|3635
3JAN|1|5|C|3636
3JAN|1|5|U|3637
3JAN|1|5|G|3638
*
3JAN|1|5|C|3650
3JAN|1|5|A|3651
3JAN|1|5|A|3652
3JAN|1|5|A|3653
3JAN|1|5|G|3654
3JAN|1|5|C|3655
3JAN|1|5|A|3656
3JAN|1|5|U|3657
*
3JAN|1|5|A|3687
3JAN|1|5|U|3688
3JAN|1|5|G|3689
3JAN|1|5|U|3690
3JAN|1|5|G|3691
3JAN|1|5|A|3692
3JAN|1|5|U|3693
3JAN|1|5|U|3694
3JAN|1|5|U|3695
3JAN|1|5|C|3696
3JAN|1|5|U|3697
3JAN|1|5|G|3698
*
3JAN|1|5|C|3752
3JAN|1|5|G|3753
3JAN|1|5|G|3754
*
3JAN|1|5|U|3770
3JAN|1|5|C|3771
3JAN|1|5|U|3772
3JAN|1|5|U|3773
3JAN|1|5|A|3774
3JAN|1|5|A|3775
3JAN|1|5|G|3776
3JAN|1|5|G|3777
3JAN|1|5|U|3778
3JAN|1|5|A|3779
3JAN|1|5|G|3780
3JAN|1|5|C|3781
*
3JAN|1|5|G|3811
3JAN|1|5|C|3812
3JAN|1|5|A|3813
3JAN|1|5|U|3814
3JAN|1|5|G|3815
3JAN|1|5|A|3816
3JAN|1|5|A|3817
3JAN|1|5|U|3818
3JAN|1|5|G|3819
3JAN|1|5|G|3820
3JAN|1|5|A|3821
3JAN|1|5|U|3822
3JAN|1|5|G|3823
3JAN|1|5|A|3824
3JAN|1|5|A|3825
3JAN|1|5|C|3826

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain 3: Transfer RNA; tRNA
Chain A: Ribosomal protein uL2
Chain S2: Small subunit ribosomal RNA; SSU rRNA
Chain n: Ribosomal protein eL41
Chain p: Ribosomal protein eL43

J6_3JAN_002