Loop J6_3JBO

3D structure

PDB id: 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å

Loop

Sequence: CAAAUC*GAAGAAAAGAAAA*UGAUU*ACCAG*CUAAAUAUAU*AG
Length: 41 nucleotides
Bulged bases: 3JBO|1|AA|A|67, 3JBO|1|AA|A|337
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JBO|1|AA|C|23
3JBO|1|AA|A|24
3JBO|1|AA|A|25
3JBO|1|AA|A|26
3JBO|1|AA|U|27
3JBO|1|AA|C|28
*
3JBO|1|AA|G|56
3JBO|1|AA|A|57
3JBO|1|AA|A|58
3JBO|1|AA|G|59
3JBO|1|AA|A|60
3JBO|1|AA|A|61
3JBO|1|AA|A|62
3JBO|1|AA|A|63
3JBO|1|AA|G|64
3JBO|1|AA|A|65
3JBO|1|AA|A|66
3JBO|1|AA|A|67
3JBO|1|AA|A|68
*
3JBO|1|AA|U|75
3JBO|1|AA|G|76
3JBO|1|AA|A|77
3JBO|1|AA|U|78
3JBO|1|AA|U|79
*
3JBO|1|AA|A|106
3JBO|1|AA|C|107
3JBO|1|AA|C|108
3JBO|1|AA|A|109
3JBO|1|AA|G|110
*
3JBO|1|AA|C|329
3JBO|1|AA|U|330
3JBO|1|AA|A|331
3JBO|1|AA|A|332
3JBO|1|AA|A|333
3JBO|1|AA|U|334
3JBO|1|AA|A|335
3JBO|1|AA|U|336
3JBO|1|AA|A|337
3JBO|1|AA|U|338
*
3JBO|1|AC|A|37
3JBO|1|AC|G|38

Current chains

Chain AA: 28S ribosomal RNA
Chain AC: 5.8S ribosomal RNA

Nearby chains

Chain A3: 60S ribosomal protein uL29
Chain AF: 60S ribosomal protein uL4
Chain AL: 60S ribosomal protein eL13
Chain AP: 60S ribosomal protein eL15
Chain Ab: 60S ribosomal protein eL36
Chain Ac: 60S ribosomal protein eL37

J6_3JBO_001