J6_3JBU_003

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UGCAACUG*CACAGCACU*GGUGUGACGCCUG*CG*CCUAAGGUAG*CGAAUGGCGUAAUGAUG

Length

59 nucleotides

Bulged bases

3JBU|1|b|U|1971, 3JBU|1|b|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|U|1769
3JBU|1|b|G|1770
3JBU|1|b|C|1771
3JBU|1|b|A|1772
3JBU|1|b|A|1773
3JBU|1|b|C|1774
3JBU|1|b|U|1775
3JBU|1|b|G|1776
*
3JBU|1|b|C|1788
3JBU|1|b|A|1789
3JBU|1|b|C|1790
3JBU|1|b|A|1791
3JBU|1|b|G|1792
3JBU|1|b|C|1793
3JBU|1|b|A|1794
3JBU|1|b|C|1795
3JBU|1|b|U|1796
*
3JBU|1|b|G|1823
3JBU|1|b|G|1824
3JBU|1|b|U|1825
3JBU|1|b|G|1826
3JBU|1|b|U|1827
3JBU|1|b|G|1828
3JBU|1|b|A|1829
3JBU|1|b|C|1830
3JBU|1|b|G|1831
3JBU|1|b|C|1832
3JBU|1|b|C|1833
3JBU|1|b|U|1834
3JBU|1|b|G|1835
*
3JBU|1|b|C|1905
3JBU|1|b|G|1906
*
3JBU|1|b|C|1924
3JBU|1|b|C|1925
3JBU|1|b|U|1926
3JBU|1|b|A|1927
3JBU|1|b|A|1928
3JBU|1|b|G|1929
3JBU|1|b|G|1930
3JBU|1|b|U|1931
3JBU|1|b|A|1932
3JBU|1|b|G|1933
*
3JBU|1|b|C|1967
3JBU|1|b|G|1968
3JBU|1|b|A|1969
3JBU|1|b|A|1970
3JBU|1|b|U|1971
3JBU|1|b|G|1972
3JBU|1|b|G|1973
3JBU|1|b|C|1974
3JBU|1|b|G|1975
3JBU|1|b|U|1976
3JBU|1|b|A|1977
3JBU|1|b|A|1978
3JBU|1|b|U|1979
3JBU|1|b|G|1980
3JBU|1|b|A|1981
3JBU|1|b|U|1982
3JBU|1|b|G|1983

Current chains

Chain b

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2

Chain v

Transfer RNA; tRNA