J6_3JBV_001

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

3JBV|1|b|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|G|45
3JBV|1|b|G|46
*
3JBV|1|b|C|179
3JBV|1|b|G|180
3JBV|1|b|A|181
3JBV|1|b|A|182
3JBV|1|b|C|183
*
3JBV|1|b|G|214
3JBV|1|b|G|215
3JBV|1|b|A|216
3JBV|1|b|A|217
3JBV|1|b|A|218
3JBV|1|b|A|219
3JBV|1|b|G|220
3JBV|1|b|A|221
3JBV|1|b|A|222
3JBV|1|b|A|223
3JBV|1|b|U|224
*
3JBV|1|b|A|231
3JBV|1|b|G|232
3JBV|1|b|A|233
3JBV|1|b|U|234
3JBV|1|b|U|235
*
3JBV|1|b|A|262
3JBV|1|b|G|263
3JBV|1|b|C|264
3JBV|1|b|A|265
3JBV|1|b|G|266
*
3JBV|1|b|C|426
3JBV|1|b|U|427
3JBV|1|b|A|428
3JBV|1|b|A|429
3JBV|1|b|A|430
3JBV|1|b|U|431
3JBV|1|b|A|432
3JBV|1|b|C|433

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34