J6_3PIO_001

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAGC*GGAAC*GGAGAAGAAAGA*UCGAUU*AUCAG*CUAAAUACUCCC

Length

45 nucleotides

Bulged bases

3PIO|1|X|A|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|G|41
3PIO|1|X|G|42
3PIO|1|X|A|43
3PIO|1|X|G|44
3PIO|1|X|C|45
*
3PIO|1|X|G|156
3PIO|1|X|G|157
3PIO|1|X|A|158
3PIO|1|X|A|159
3PIO|1|X|C|160
*
3PIO|1|X|G|191
3PIO|1|X|G|192
3PIO|1|X|A|193
3PIO|1|X|G|194
3PIO|1|X|A|195
3PIO|1|X|A|196
3PIO|1|X|G|197
3PIO|1|X|A|198
3PIO|1|X|A|199
3PIO|1|X|A|200
3PIO|1|X|G|201
3PIO|1|X|A|202
*
3PIO|1|X|U|207
3PIO|1|X|C|208
3PIO|1|X|G|209
3PIO|1|X|A|210
3PIO|1|X|U|211
3PIO|1|X|U|212
*
3PIO|1|X|A|239
3PIO|1|X|U|240
3PIO|1|X|C|241
3PIO|1|X|A|242
3PIO|1|X|G|243
*
3PIO|1|X|C|439
3PIO|1|X|U|440
3PIO|1|X|A|441
3PIO|1|X|A|442
3PIO|1|X|A|443
3PIO|1|X|U|444
3PIO|1|X|A|445
3PIO|1|X|C|446
3PIO|1|X|U|447
3PIO|1|X|C|448
3PIO|1|X|C|449
3PIO|1|X|C|450

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L4