J6_3PIO_002
3D structure
- PDB id
- 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GCUUUA*UUUG*CG*CGCCC*GGCUUAGUGAACC*GAUCAACGGAUAAAAGU
- Length
- 47 nucleotides
- Bulged bases
- 3PIO|1|X|U|2059, 3PIO|1|X|A|2367, 3PIO|1|X|U|2369, 3PIO|1|X|G|2407, 3PIO|1|X|A|2409, 3PIO|1|X|U|2410
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3PIO|1|X|G|2055
3PIO|1|X|C|2056
3PIO|1|X|U|2057
3PIO|1|X|U|2058
3PIO|1|X|U|2059
3PIO|1|X|A|2060
*
3PIO|1|X|U|2222
3PIO|1|X|U|2223
3PIO|1|X|U|2224
3PIO|1|X|G|2225
*
3PIO|1|X|C|2237
3PIO|1|X|G|2238
*
3PIO|1|X|C|2260
3PIO|1|X|G|2261
3PIO|1|X|C|2262
3PIO|1|X|C|2263
3PIO|1|X|C|2264
*
3PIO|1|X|G|2362
3PIO|1|X|G|2363
3PIO|1|X|C|2364
3PIO|1|X|U|2365
3PIO|1|X|U|2366
3PIO|1|X|A|2367
3PIO|1|X|G|2368
3PIO|1|X|U|2369
3PIO|1|X|G|2370
3PIO|1|X|A|2371
3PIO|1|X|A|2372
3PIO|1|X|C|2373
3PIO|1|X|C|2374
*
3PIO|1|X|G|2400
3PIO|1|X|A|2401
3PIO|1|X|U|2402
3PIO|1|X|C|2403
3PIO|1|X|A|2404
3PIO|1|X|A|2405
3PIO|1|X|C|2406
3PIO|1|X|G|2407
3PIO|1|X|G|2408
3PIO|1|X|A|2409
3PIO|1|X|U|2410
3PIO|1|X|A|2411
3PIO|1|X|A|2412
3PIO|1|X|A|2413
3PIO|1|X|A|2414
3PIO|1|X|G|2415
3PIO|1|X|U|2416
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain A
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
Coloring options: