J6_4CUV_001

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

4CUV|1|1|A|67, 4CUV|1|1|U|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CUV|1|1|G|22
4CUV|1|1|A|23
4CUV|1|1|G|24
4CUV|1|1|U|25
4CUV|1|1|A|26
4CUV|1|1|C|27
*
4CUV|1|1|G|58
4CUV|1|1|G|59
4CUV|1|1|A|60
4CUV|1|1|A|61
4CUV|1|1|A|62
4CUV|1|1|A|63
4CUV|1|1|G|64
4CUV|1|1|A|65
4CUV|1|1|A|66
4CUV|1|1|A|67
4CUV|1|1|C|68
*
4CUV|1|1|G|75
4CUV|1|1|G|76
4CUV|1|1|A|77
4CUV|1|1|U|78
4CUV|1|1|U|79
*
4CUV|1|1|A|106
4CUV|1|1|A|107
4CUV|1|1|A|108
4CUV|1|1|A|109
4CUV|1|1|G|110
*
4CUV|1|1|C|321
4CUV|1|1|U|322
4CUV|1|1|A|323
4CUV|1|1|A|324
4CUV|1|1|A|325
4CUV|1|1|U|326
4CUV|1|1|A|327
4CUV|1|1|U|328
4CUV|1|1|U|329
4CUV|1|1|G|330
4CUV|1|1|G|331
*
4CUV|1|4|C|32
4CUV|1|4|A|33
4CUV|1|4|U|34
4CUV|1|4|C|35

Current chains

Chain 1

25S RRNA

Chain 4

5.8S RRNA

Nearby chains