J6_4CXE_001

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

4CXE|1|2|A|1400, 4CXE|1|2|G|1444, 4CXE|1|2|A|1479, 4CXE|1|2|C|1480, 4CXE|1|2|G|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|C|1332
4CXE|1|2|G|1333
4CXE|1|2|A|1334
4CXE|1|2|G|1335
*
4CXE|1|2|C|1364
4CXE|1|2|G|1365
4CXE|1|2|C|1366
4CXE|1|2|A|1367
4CXE|1|2|A|1368
*
4CXE|1|2|U|1375
4CXE|1|2|G|1376
4CXE|1|2|A|1377
4CXE|1|2|A|1378
4CXE|1|2|G|1379
*
4CXE|1|2|C|1398
4CXE|1|2|G|1399
4CXE|1|2|A|1400
4CXE|1|2|G|1401
*
4CXE|1|2|C|1443
4CXE|1|2|G|1444
4CXE|1|2|G|1445
*
4CXE|1|2|C|1478
4CXE|1|2|A|1479
4CXE|1|2|C|1480
4CXE|1|2|G|1481
4CXE|1|2|A|1482
4CXE|1|2|G|1483

Current chains

Chain 2

28S RRNA

Nearby chains