J6_4CXE_002

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

4CXE|1|2|G|3891, 4CXE|1|2|U|4150, 4CXE|1|2|C|4297, 4CXE|1|2|A|4336, 4CXE|1|2|A|4338, 4CXE|1|2|A|4339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|U|3889
4CXE|1|2|U|3890
4CXE|1|2|G|3891
4CXE|1|2|A|3892
*
4CXE|1|2|U|4148
4CXE|1|2|U|4149
4CXE|1|2|U|4150
4CXE|1|2|G|4151
*
4CXE|1|2|C|4164
4CXE|1|2|A|4165
*
4CXE|1|2|U|4187
4CXE|1|2|G|4188
4CXE|1|2|U|4189
4CXE|1|2|C|4190
*
4CXE|1|2|G|4291
4CXE|1|2|C|4292
4CXE|1|2|C|4293
4CXE|1|2|U|4294
4CXE|1|2|C|4295
4CXE|1|2|A|4296
4CXE|1|2|C|4297
4CXE|1|2|G|4298
4CXE|1|2|A|4299
4CXE|1|2|U|4300
4CXE|1|2|C|4301
4CXE|1|2|C|4302
*
4CXE|1|2|G|4330
4CXE|1|2|G|4331
4CXE|1|2|U|4332
4CXE|1|2|G|4333
4CXE|1|2|U|4334
4CXE|1|2|C|4335
4CXE|1|2|A|4336
4CXE|1|2|G|4337
4CXE|1|2|A|4338
4CXE|1|2|A|4339
4CXE|1|2|A|4340
4CXE|1|2|A|4341

Current chains

Chain 2

28S RRNA

Nearby chains