J6_4D5Y_001
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAGG*CCGG*CACGAG
- Length
- 29 nucleotides
- Bulged bases
- 4D5Y|1|2|A|1400, 4D5Y|1|2|G|1444, 4D5Y|1|2|A|1479, 4D5Y|1|2|C|1480, 4D5Y|1|2|G|1481
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|2|C|1332
4D5Y|1|2|G|1333
4D5Y|1|2|A|1334
4D5Y|1|2|G|1335
*
4D5Y|1|2|C|1364
4D5Y|1|2|G|1365
4D5Y|1|2|C|1366
4D5Y|1|2|A|1367
4D5Y|1|2|A|1368
*
4D5Y|1|2|U|1375
4D5Y|1|2|G|1376
4D5Y|1|2|A|1377
4D5Y|1|2|A|1378
4D5Y|1|2|G|1379
*
4D5Y|1|2|C|1398
4D5Y|1|2|G|1399
4D5Y|1|2|A|1400
4D5Y|1|2|G|1401
4D5Y|1|2|G|1402
*
4D5Y|1|2|C|1442
4D5Y|1|2|C|1443
4D5Y|1|2|G|1444
4D5Y|1|2|G|1445
*
4D5Y|1|2|C|1478
4D5Y|1|2|A|1479
4D5Y|1|2|C|1480
4D5Y|1|2|G|1481
4D5Y|1|2|A|1482
4D5Y|1|2|G|1483
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN UL4
- Chain L
- 60S RIBOSOMAL PROTEIN EL13
- Chain Q
- 60S RIBOSOMAL PROTEIN EL18
- Chain a
- 60S RIBOSOMAL PROTEIN UL15
- Chain b
- 60S RIBOSOMAL PROTEIN EL29
- Chain i
- 60S RIBOSOMAL PROTEIN EL36
Coloring options: