J6_4D67_002
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUGAC*GUUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 40 nucleotides
- Bulged bases
- 4D67|1|2|G|3891, 4D67|1|2|U|4150, 4D67|1|2|C|4297, 4D67|1|2|A|4336, 4D67|1|2|A|4338, 4D67|1|2|A|4339
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D67|1|2|U|3889
4D67|1|2|U|3890
4D67|1|2|G|3891
4D67|1|2|A|3892
4D67|1|2|C|3893
*
4D67|1|2|G|4147
4D67|1|2|U|4148
4D67|1|2|U|4149
4D67|1|2|U|4150
4D67|1|2|G|4151
*
4D67|1|2|C|4164
4D67|1|2|A|4165
*
4D67|1|2|U|4187
4D67|1|2|G|4188
4D67|1|2|U|4189
4D67|1|2|C|4190
*
4D67|1|2|G|4291
4D67|1|2|C|4292
4D67|1|2|C|4293
4D67|1|2|U|4294
4D67|1|2|C|4295
4D67|1|2|A|4296
4D67|1|2|C|4297
4D67|1|2|G|4298
4D67|1|2|A|4299
4D67|1|2|U|4300
4D67|1|2|C|4301
4D67|1|2|C|4302
*
4D67|1|2|G|4330
4D67|1|2|G|4331
4D67|1|2|U|4332
4D67|1|2|G|4333
4D67|1|2|U|4334
4D67|1|2|C|4335
4D67|1|2|A|4336
4D67|1|2|G|4337
4D67|1|2|A|4338
4D67|1|2|A|4339
4D67|1|2|A|4340
4D67|1|2|A|4341
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L8
- Chain N
- 60S RIBOSOMAL PROTEIN L15
- Chain Q
- 60S RIBOSOMAL PROTEIN L18
- Chain T
- 60S RIBOSOMAL PROTEIN L21
- Chain a
- 60S RIBOSOMAL PROTEIN L27A
- Chain o
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: