J6_4IOA_002
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 4IOA|1|X|U|2059, 4IOA|1|X|A|2367, 4IOA|1|X|U|2369, 4IOA|1|X|G|2407, 4IOA|1|X|A|2409, 4IOA|1|X|U|2410
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J6_39149.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-tSS-F-F-cWW-F-F-F-F-F-cWW-F-cWW-cHW-F-cWH-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4IOA|1|X|U|2057
4IOA|1|X|U|2058
4IOA|1|X|U|2059
4IOA|1|X|A|2060
*
4IOA|1|X|U|2222
4IOA|1|X|U|2223
4IOA|1|X|U|2224
4IOA|1|X|G|2225
*
4IOA|1|X|C|2237
4IOA|1|X|G|2238
*
4IOA|1|X|C|2260
4IOA|1|X|G|2261
4IOA|1|X|C|2262
4IOA|1|X|C|2263
*
4IOA|1|X|G|2363
4IOA|1|X|C|2364
4IOA|1|X|U|2365
4IOA|1|X|U|2366
4IOA|1|X|A|2367
4IOA|1|X|G|2368
4IOA|1|X|U|2369
4IOA|1|X|G|2370
4IOA|1|X|A|2371
4IOA|1|X|A|2372
4IOA|1|X|C|2373
4IOA|1|X|C|2374
*
4IOA|1|X|G|2400
4IOA|1|X|A|2401
4IOA|1|X|U|2402
4IOA|1|X|C|2403
4IOA|1|X|A|2404
4IOA|1|X|A|2405
4IOA|1|X|C|2406
4IOA|1|X|G|2407
4IOA|1|X|G|2408
4IOA|1|X|A|2409
4IOA|1|X|U|2410
4IOA|1|X|A|2411
4IOA|1|X|A|2412
4IOA|1|X|A|2413
4IOA|1|X|A|2414
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain A
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
Coloring options: