J6_4UJC_005
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 4UJC|1|A2|A|1400, 4UJC|1|A2|G|1444, 4UJC|1|A2|A|1479, 4UJC|1|A2|C|1480, 4UJC|1|A2|G|1481
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|A2|C|1332
4UJC|1|A2|G|1333
4UJC|1|A2|A|1334
4UJC|1|A2|G|1335
*
4UJC|1|A2|C|1364
4UJC|1|A2|G|1365
4UJC|1|A2|C|1366
4UJC|1|A2|A|1367
4UJC|1|A2|A|1368
*
4UJC|1|A2|U|1375
4UJC|1|A2|G|1376
4UJC|1|A2|A|1377
4UJC|1|A2|A|1378
4UJC|1|A2|G|1379
*
4UJC|1|A2|C|1398
4UJC|1|A2|G|1399
4UJC|1|A2|A|1400
4UJC|1|A2|G|1401
*
4UJC|1|A2|C|1443
4UJC|1|A2|G|1444
4UJC|1|A2|G|1445
*
4UJC|1|A2|C|1478
4UJC|1|A2|A|1479
4UJC|1|A2|C|1480
4UJC|1|A2|G|1481
4UJC|1|A2|A|1482
4UJC|1|A2|G|1483
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4
- Chain BL
- 60S RIBOSOMAL PROTEIN L13
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18
- Chain Ba
- 60S RIBOSOMAL PROTEIN L27A
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36
Coloring options: