J6_4UJD_001
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAGG*CCGG*CACGAG
- Length
- 29 nucleotides
- Bulged bases
- 4UJD|1|A2|A|1400, 4UJD|1|A2|G|1444, 4UJD|1|A2|A|1479, 4UJD|1|A2|C|1480, 4UJD|1|A2|G|1481
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|C|1332
4UJD|1|A2|G|1333
4UJD|1|A2|A|1334
4UJD|1|A2|G|1335
*
4UJD|1|A2|C|1364
4UJD|1|A2|G|1365
4UJD|1|A2|C|1366
4UJD|1|A2|A|1367
4UJD|1|A2|A|1368
*
4UJD|1|A2|U|1375
4UJD|1|A2|G|1376
4UJD|1|A2|A|1377
4UJD|1|A2|A|1378
4UJD|1|A2|G|1379
*
4UJD|1|A2|C|1398
4UJD|1|A2|G|1399
4UJD|1|A2|A|1400
4UJD|1|A2|G|1401
4UJD|1|A2|G|1402
*
4UJD|1|A2|C|1442
4UJD|1|A2|C|1443
4UJD|1|A2|G|1444
4UJD|1|A2|G|1445
*
4UJD|1|A2|C|1478
4UJD|1|A2|A|1479
4UJD|1|A2|C|1480
4UJD|1|A2|G|1481
4UJD|1|A2|A|1482
4UJD|1|A2|G|1483
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L4
- Chain AL
- 60S RIBOSOMAL PROTEIN L13
- Chain AQ
- 60S RIBOSOMAL PROTEIN L18
- Chain Aa
- 60S RIBOSOMAL PROTEIN L27A
- Chain Ab
- 60S RIBOSOMAL PROTEIN L29
- Chain Ai
- 60S RIBOSOMAL PROTEIN L36
Coloring options: