J6_4UJD_006
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 4UJD|1|A2|G|3891, 4UJD|1|A2|U|4150, 4UJD|1|A2|C|4297, 4UJD|1|A2|A|4336, 4UJD|1|A2|A|4338, 4UJD|1|A2|A|4339
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|U|3889
4UJD|1|A2|U|3890
4UJD|1|A2|G|3891
4UJD|1|A2|A|3892
*
4UJD|1|A2|U|4148
4UJD|1|A2|U|4149
4UJD|1|A2|U|4150
4UJD|1|A2|G|4151
*
4UJD|1|A2|C|4164
4UJD|1|A2|A|4165
*
4UJD|1|A2|U|4187
4UJD|1|A2|G|4188
4UJD|1|A2|U|4189
4UJD|1|A2|C|4190
*
4UJD|1|A2|G|4291
4UJD|1|A2|C|4292
4UJD|1|A2|C|4293
4UJD|1|A2|U|4294
4UJD|1|A2|C|4295
4UJD|1|A2|A|4296
4UJD|1|A2|C|4297
4UJD|1|A2|G|4298
4UJD|1|A2|A|4299
4UJD|1|A2|U|4300
4UJD|1|A2|C|4301
4UJD|1|A2|C|4302
*
4UJD|1|A2|G|4330
4UJD|1|A2|G|4331
4UJD|1|A2|U|4332
4UJD|1|A2|G|4333
4UJD|1|A2|U|4334
4UJD|1|A2|C|4335
4UJD|1|A2|A|4336
4UJD|1|A2|G|4337
4UJD|1|A2|A|4338
4UJD|1|A2|A|4339
4UJD|1|A2|A|4340
4UJD|1|A2|A|4341
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AA
- 60S RIBOSOMAL PROTEIN L8
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain AQ
- 60S RIBOSOMAL PROTEIN L18
- Chain AT
- 60S RIBOSOMAL PROTEIN L21
- Chain Aa
- 60S RIBOSOMAL PROTEIN L27A
- Chain Ao
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: