J6_4UJD_007
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGGAUCUUGGGAG*CCCCUUGCCUCU*AAGCGUUUACUUUG*CUAGGAAUAAUGGAAUAGGACC*GGCCAUGAUUAAGA*UA
- Length
- 77 nucleotides
- Bulged bases
- 4UJD|1|C1|C|687, 4UJD|1|C1|U|688, 4UJD|1|C1|U|742, 4UJD|1|C1|U|743, 4UJD|1|C1|C|745, 4UJD|1|C1|C|797, 4UJD|1|C1|U|871, 4UJD|1|C1|G|873, 4UJD|1|C1|A|913, 4UJD|1|C1|G|921
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|C1|U|682
4UJD|1|C1|G|683
4UJD|1|C1|G|684
4UJD|1|C1|A|685
4UJD|1|C1|U|686
4UJD|1|C1|C|687
4UJD|1|C1|U|688
4UJD|1|C1|U|689
4UJD|1|C1|G|690
4UJD|1|C1|G|691
4UJD|1|C1|G|692
4UJD|1|C1|A|693
4UJD|1|C1|G|694
*
4UJD|1|C1|C|738
4UJD|1|C1|C|739
4UJD|1|C1|C|740
4UJD|1|C1|C|741
4UJD|1|C1|U|742
4UJD|1|C1|U|743
4UJD|1|C1|G|744
4UJD|1|C1|C|745
4UJD|1|C1|C|746
4UJD|1|C1|U|747
4UJD|1|C1|C|748
4UJD|1|C1|U|749
*
4UJD|1|C1|A|794
4UJD|1|C1|A|795
4UJD|1|C1|G|796
4UJD|1|C1|C|797
4UJD|1|C1|G|798
4UJD|1|C1|U|799
4UJD|1|C1|U|800
4UJD|1|C1|U|801
4UJD|1|C1|A|802
4UJD|1|C1|C|803
4UJD|1|C1|U|804
4UJD|1|C1|U|805
4UJD|1|C1|U|806
4UJD|1|C1|G|807
*
4UJD|1|C1|C|856
4UJD|1|C1|U|857
4UJD|1|C1|A|858
4UJD|1|C1|G|859
4UJD|1|C1|G|860
4UJD|1|C1|A|861
4UJD|1|C1|A|862
4UJD|1|C1|U|863
4UJD|1|C1|A|864
4UJD|1|C1|A|865
4UJD|1|C1|U|866
4UJD|1|C1|G|867
4UJD|1|C1|G|868
4UJD|1|C1|A|869
4UJD|1|C1|A|870
4UJD|1|C1|U|871
4UJD|1|C1|A|872
4UJD|1|C1|G|873
4UJD|1|C1|G|874
4UJD|1|C1|A|875
4UJD|1|C1|C|876
4UJD|1|C1|C|877
*
4UJD|1|C1|G|909
4UJD|1|C1|G|910
4UJD|1|C1|C|911
4UJD|1|C1|C|912
4UJD|1|C1|A|913
4UJD|1|C1|U|914
4UJD|1|C1|G|915
4UJD|1|C1|A|916
4UJD|1|C1|U|917
4UJD|1|C1|U|918
4UJD|1|C1|A|919
4UJD|1|C1|A|920
4UJD|1|C1|G|921
4UJD|1|C1|A|922
*
4UJD|1|C1|U|1022
4UJD|1|C1|A|1023
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain AR
- 60S RIBOSOMAL PROTEIN L19
- Chain CE
- 40S RIBOSOMAL PROTEIN ES4
- Chain CH
- 40S RIBOSOMAL PROTEIN ES7
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
- Chain CN
- 40S RIBOSOMAL PROTEIN ES15
- Chain CW
- 40S RIBOSOMAL PROTEIN US8
- Chain CX
- 40S RIBOSOMAL PROTEIN US12
- Chain Cb
- 40S RIBOSOMAL PROTEIN ES27
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