J6_4UJE_006
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 4UJE|1|A2|G|3891, 4UJE|1|A2|U|4150, 4UJE|1|A2|C|4297, 4UJE|1|A2|A|4336, 4UJE|1|A2|A|4338, 4UJE|1|A2|A|4339
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJE|1|A2|U|3889
4UJE|1|A2|U|3890
4UJE|1|A2|G|3891
4UJE|1|A2|A|3892
*
4UJE|1|A2|U|4148
4UJE|1|A2|U|4149
4UJE|1|A2|U|4150
4UJE|1|A2|G|4151
*
4UJE|1|A2|C|4164
4UJE|1|A2|A|4165
*
4UJE|1|A2|U|4187
4UJE|1|A2|G|4188
4UJE|1|A2|U|4189
4UJE|1|A2|C|4190
*
4UJE|1|A2|G|4291
4UJE|1|A2|C|4292
4UJE|1|A2|C|4293
4UJE|1|A2|U|4294
4UJE|1|A2|C|4295
4UJE|1|A2|A|4296
4UJE|1|A2|C|4297
4UJE|1|A2|G|4298
4UJE|1|A2|A|4299
4UJE|1|A2|U|4300
4UJE|1|A2|C|4301
4UJE|1|A2|C|4302
*
4UJE|1|A2|G|4330
4UJE|1|A2|G|4331
4UJE|1|A2|U|4332
4UJE|1|A2|G|4333
4UJE|1|A2|U|4334
4UJE|1|A2|C|4335
4UJE|1|A2|A|4336
4UJE|1|A2|G|4337
4UJE|1|A2|A|4338
4UJE|1|A2|A|4339
4UJE|1|A2|A|4340
4UJE|1|A2|A|4341
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain CA
- 60S RIBOSOMAL PROTEIN L8
- Chain CN
- 60S RIBOSOMAL PROTEIN L15
- Chain CQ
- 60S RIBOSOMAL PROTEIN L18
- Chain CT
- 60S RIBOSOMAL PROTEIN L21
- Chain Ca
- 60S RIBOSOMAL PROTEIN L27A
- Chain Co
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: