J6_4V49_002

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4V49|1|B0|U|2059, 4V49|1|B0|G|2407, 4V49|1|B0|A|2409, 4V49|1|B0|U|2410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V49|1|B0|U|2057
4V49|1|B0|U|2058
4V49|1|B0|U|2059
4V49|1|B0|A|2060
*
4V49|1|B0|U|2222
4V49|1|B0|U|2223
4V49|1|B0|U|2224
4V49|1|B0|G|2225
*
4V49|1|B0|C|2237
4V49|1|B0|G|2238
*
4V49|1|B0|C|2260
4V49|1|B0|G|2261
4V49|1|B0|C|2262
4V49|1|B0|C|2263
*
4V49|1|B0|G|2363
4V49|1|B0|C|2364
4V49|1|B0|U|2365
4V49|1|B0|U|2366
4V49|1|B0|A|2367
4V49|1|B0|G|2368
4V49|1|B0|U|2369
4V49|1|B0|G|2370
4V49|1|B0|A|2371
4V49|1|B0|A|2372
4V49|1|B0|C|2373
4V49|1|B0|C|2374
*
4V49|1|B0|G|2400
4V49|1|B0|A|2401
4V49|1|B0|U|2402
4V49|1|B0|C|2403
4V49|1|B0|A|2404
4V49|1|B0|A|2405
4V49|1|B0|C|2406
4V49|1|B0|G|2407
4V49|1|B0|G|2408
4V49|1|B0|A|2409
4V49|1|B0|U|2410
4V49|1|B0|A|2411
4V49|1|B0|A|2412
4V49|1|B0|A|2413
4V49|1|B0|A|2414

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BA

50S ribosomal protein L2

Chain BJ

50S ribosomal protein L15

Chain BU

50S ribosomal protein L27

Chain BY

50S ribosomal protein L31