J6_4V4J_001

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V4J|1|w|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4J|1|w|G|45
4V4J|1|w|C|46
*
4V4J|1|w|G|179
4V4J|1|w|G|180
4V4J|1|w|A|181
4V4J|1|w|A|182
4V4J|1|w|C|183
*
4V4J|1|w|G|214
4V4J|1|w|G|215
4V4J|1|w|A|216
4V4J|1|w|G|217
4V4J|1|w|A|218
4V4J|1|w|G|219
4V4J|1|w|G|220
4V4J|1|w|A|221
4V4J|1|w|A|222
4V4J|1|w|A|223
4V4J|1|w|G|224
*
4V4J|1|w|C|231
4V4J|1|w|G|232
4V4J|1|w|A|233
4V4J|1|w|C|234
4V4J|1|w|U|235
*
4V4J|1|w|A|262
4V4J|1|w|C|263
4V4J|1|w|C|264
4V4J|1|w|A|265
4V4J|1|w|G|266
*
4V4J|1|w|C|426
4V4J|1|w|U|427
4V4J|1|w|A|428
4V4J|1|w|A|429
4V4J|1|w|G|430
4V4J|1|w|U|431
4V4J|1|w|A|432
4V4J|1|w|C|433

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain Z

50S ribosomal protein L34