J6_4V4J_002
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 4V4J|1|w|U|2076, 4V4J|1|w|U|2390, 4V4J|1|w|G|2428, 4V4J|1|w|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4J|1|w|U|2074
4V4J|1|w|U|2075
4V4J|1|w|U|2076
4V4J|1|w|A|2077
*
4V4J|1|w|U|2243
4V4J|1|w|U|2244
4V4J|1|w|U|2245
4V4J|1|w|G|2246
*
4V4J|1|w|C|2258
4V4J|1|w|G|2259
*
4V4J|1|w|C|2281
4V4J|1|w|G|2282
4V4J|1|w|C|2283
4V4J|1|w|C|2284
*
4V4J|1|w|G|2384
4V4J|1|w|C|2385
4V4J|1|w|C|2386
4V4J|1|w|U|2387
4V4J|1|w|A|2388
4V4J|1|w|G|2389
4V4J|1|w|U|2390
4V4J|1|w|G|2391
4V4J|1|w|A|2392
4V4J|1|w|A|2393
4V4J|1|w|C|2394
4V4J|1|w|C|2395
*
4V4J|1|w|G|2421
4V4J|1|w|A|2422
4V4J|1|w|U|2423
4V4J|1|w|C|2424
4V4J|1|w|A|2425
4V4J|1|w|A|2426
4V4J|1|w|C|2427
4V4J|1|w|G|2428
4V4J|1|w|G|2429
4V4J|1|w|A|2430
4V4J|1|w|U|2431
4V4J|1|w|A|2432
4V4J|1|w|A|2433
4V4J|1|w|A|2434
4V4J|1|w|A|2435
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
- Chain J
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L27
- Chain V
- LSU ribosomal protein L28P
- Chain a
- 50S ribosomal protein L35
Coloring options: