J6_4V5A_002

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCC*GGGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

38 nucleotides

Bulged bases

4V5A|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|DA|G|44
4V5A|1|DA|C|45
4V5A|1|DA|C|47
*
4V5A|1|DA|G|178
4V5A|1|DA|G|179
4V5A|1|DA|G|180
4V5A|1|DA|A|181
4V5A|1|DA|A|182
4V5A|1|DA|C|183
*
4V5A|1|DA|G|214
4V5A|1|DA|G|215
4V5A|1|DA|A|216
4V5A|1|DA|G|217
4V5A|1|DA|A|218
4V5A|1|DA|G|219
4V5A|1|DA|G|220
4V5A|1|DA|A|221
4V5A|1|DA|A|222
4V5A|1|DA|A|223
4V5A|1|DA|G|224
*
4V5A|1|DA|C|231
4V5A|1|DA|G|232
4V5A|1|DA|A|233
4V5A|1|DA|C|234
4V5A|1|DA|U|235
*
4V5A|1|DA|A|262
4V5A|1|DA|C|263
4V5A|1|DA|C|264
4V5A|1|DA|A|265
4V5A|1|DA|G|266
*
4V5A|1|DA|C|426
4V5A|1|DA|U|427
4V5A|1|DA|A|428
4V5A|1|DA|A|429
4V5A|1|DA|G|430
4V5A|1|DA|U|431
4V5A|1|DA|A|432
4V5A|1|DA|C|433

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DF

50S RIBOSOMAL PROTEIN L4