J6_4V5B_001

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAGC*GCUAAAUACU

Length

40 nucleotides

Bulged bases

4V5B|1|AB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|A|44
4V5B|1|AB|G|45
4V5B|1|AB|G|46
*
4V5B|1|AB|C|179
4V5B|1|AB|G|180
4V5B|1|AB|A|181
4V5B|1|AB|A|182
4V5B|1|AB|C|183
*
4V5B|1|AB|G|214
4V5B|1|AB|G|215
4V5B|1|AB|A|216
4V5B|1|AB|A|217
4V5B|1|AB|A|218
4V5B|1|AB|A|219
4V5B|1|AB|G|220
4V5B|1|AB|A|221
4V5B|1|AB|A|222
4V5B|1|AB|A|223
4V5B|1|AB|U|224
*
4V5B|1|AB|A|231
4V5B|1|AB|G|232
4V5B|1|AB|A|233
4V5B|1|AB|U|234
4V5B|1|AB|U|235
*
4V5B|1|AB|A|262
4V5B|1|AB|G|263
4V5B|1|AB|C|264
4V5B|1|AB|A|265
4V5B|1|AB|G|266
4V5B|1|AB|C|267
*
4V5B|1|AB|G|425
4V5B|1|AB|C|426
4V5B|1|AB|U|427
4V5B|1|AB|A|428
4V5B|1|AB|A|429
4V5B|1|AB|A|430
4V5B|1|AB|U|431
4V5B|1|AB|A|432
4V5B|1|AB|C|433
4V5B|1|AB|U|434

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A2

50S RIBOSOMAL PROTEIN L34