Loop J6_4V5B

3D structure

PDB id: 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of PDF binding helix in complex with the ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å

Loop

Sequence: CGAAAG*CGCC*GAGACAC*GAAGAGGGAAACAACCCAGAC*GC*GGGUAG
Length: 46 nucleotides
Bulged bases: 4V5B|1|AB|A|945
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5B|1|AB|C|817
4V5B|1|AB|G|818
4V5B|1|AB|A|819
4V5B|1|AB|A|820
4V5B|1|AB|A|821
4V5B|1|AB|G|822
*
4V5B|1|AB|C|835
4V5B|1|AB|G|836
4V5B|1|AB|C|837
4V5B|1|AB|C|838
*
4V5B|1|AB|G|940
4V5B|1|AB|A|941
4V5B|1|AB|G|942
4V5B|1|AB|A|943
4V5B|1|AB|C|944
4V5B|1|AB|A|945
4V5B|1|AB|C|946
*
4V5B|1|AB|G|971
4V5B|1|AB|A|972
4V5B|1|AB|A|973
4V5B|1|AB|G|974
4V5B|1|AB|A|975
4V5B|1|AB|G|976
4V5B|1|AB|G|977
4V5B|1|AB|G|978
4V5B|1|AB|A|979
4V5B|1|AB|A|980
4V5B|1|AB|A|981
4V5B|1|AB|C|982
4V5B|1|AB|A|983
4V5B|1|AB|A|984
4V5B|1|AB|C|985
4V5B|1|AB|C|986
4V5B|1|AB|C|987
4V5B|1|AB|A|988
4V5B|1|AB|G|989
4V5B|1|AB|A|990
4V5B|1|AB|C|991
*
4V5B|1|AB|G|1163
4V5B|1|AB|C|1164
*
4V5B|1|AB|G|1185
4V5B|1|AB|G|1186
4V5B|1|AB|G|1187
4V5B|1|AB|U|1188
4V5B|1|AB|A|1189
4V5B|1|AB|G|1190

Current chains

Chain AB: 23S RIBOSOMAL RNA

Nearby chains

Chain A3: 50S RIBOSOMAL PROTEIN L35
Chain AA: 5S ribosomal RNA; 5S rRNA
Chain AL: 50S RIBOSOMAL PROTEIN L15
Chain AQ: 50S RIBOSOMAL PROTEIN L20
Chain AR: 50S RIBOSOMAL PROTEIN L21
Chain AY: 50S RIBOSOMAL PROTEIN L30

J6_4V5B_002