J6_4V5B_003
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CGAUG*CCGCCUGGGGAGUACGGC*GUUAAAACUCAAAUGAAUUG*CACACCG*CAAGGUAA*UUG
- Length
- 61 nucleotides
- Bulged bases
- 4V5B|1|BA|G|818, 4V5B|1|BA|U|820, 4V5B|1|BA|U|884, 4V5B|1|BA|G|890, 4V5B|1|BA|C|1397, 4V5B|1|BA|C|1400, 4V5B|1|BA|A|1503, 4V5B|1|BA|U|1506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|BA|C|817
4V5B|1|BA|G|818
4V5B|1|BA|A|819
4V5B|1|BA|U|820
4V5B|1|BA|G|821
*
4V5B|1|BA|C|879
4V5B|1|BA|C|880
4V5B|1|BA|G|881
4V5B|1|BA|C|882
4V5B|1|BA|C|883
4V5B|1|BA|U|884
4V5B|1|BA|G|885
4V5B|1|BA|G|886
4V5B|1|BA|G|887
4V5B|1|BA|G|888
4V5B|1|BA|A|889
4V5B|1|BA|G|890
4V5B|1|BA|U|891
4V5B|1|BA|A|892
4V5B|1|BA|C|893
4V5B|1|BA|G|894
4V5B|1|BA|G|895
4V5B|1|BA|C|896
*
4V5B|1|BA|G|903
4V5B|1|BA|U|904
4V5B|1|BA|U|905
4V5B|1|BA|A|906
4V5B|1|BA|A|907
4V5B|1|BA|A|908
4V5B|1|BA|A|909
4V5B|1|BA|C|910
4V5B|1|BA|U|911
4V5B|1|BA|C|912
4V5B|1|BA|A|913
4V5B|1|BA|A|914
4V5B|1|BA|A|915
4V5B|1|BA|U|916
4V5B|1|BA|G|917
4V5B|1|BA|A|918
4V5B|1|BA|A|919
4V5B|1|BA|U|920
4V5B|1|BA|U|921
4V5B|1|BA|G|922
*
4V5B|1|BA|C|1395
4V5B|1|BA|A|1396
4V5B|1|BA|C|1397
4V5B|1|BA|A|1398
4V5B|1|BA|C|1399
4V5B|1|BA|C|1400
4V5B|1|BA|G|1401
*
4V5B|1|BA|C|1501
4V5B|1|BA|A|1502
4V5B|1|BA|A|1503
4V5B|1|BA|G|1504
4V5B|1|BA|G|1505
4V5B|1|BA|U|1506
4V5B|1|BA|A|1507
4V5B|1|BA|A|1508
*
4V5B|1|BA|U|1527
4V5B|1|BA|U|1528
4V5B|1|BA|G|1529
Current chains
- Chain BA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- 30S RIBOSOMAL PROTEIN S5
- Chain BH
- 30S RIBOSOMAL PROTEIN S8
- Chain BK
- 30S RIBOSOMAL PROTEIN S11
- Chain BL
- 30S RIBOSOMAL PROTEIN S12
- Chain BQ
- 30S RIBOSOMAL PROTEIN S17
- Chain BU
- 30S RIBOSOMAL PROTEIN S21
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